{"id":4261,"date":"2021-07-19T23:09:17","date_gmt":"2021-07-19T23:09:17","guid":{"rendered":"http:\/\/accugenelab.com\/academic-microbiome\/"},"modified":"2022-08-16T08:42:39","modified_gmt":"2022-08-16T08:42:39","slug":"academic-microbiome","status":"publish","type":"page","link":"https:\/\/accugenelab.com\/en\/service\/genome-analysis\/academic-microbiome\/","title":{"rendered":"Academic Microbiome"},"content":{"rendered":"\t\t
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16S\/18S\/ITS Microbiome Analysis<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t

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Microbiome Analysis\n<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t
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16S\/18S\/ITS Microbiome Service<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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What is the 16S\/18S\/ITS Microbiome Analysis Service?<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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The 16S\/18S\/ITS Microbiome Analysis identifies various microbiota\/eukaryote\/fungi (e.g. composition and distribution) in the collected samples to generate a customized microbiome profile.<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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Areas of Analysis\n<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t
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Microbiome Type<\/div><\/div><\/div><\/th>
Areas of Analysis<\/div><\/div><\/div><\/th><\/tr><\/thead>\n\t\t\t\t
Archaea, Bacteria<\/div><\/div><\/div><\/td>
16S V1V2<\/div><\/div><\/div><\/td><\/tr>
16S V3V4<\/div><\/div><\/div><\/td><\/tr>
16S V4<\/div><\/div><\/div><\/td><\/tr>
Eukaryote\n<\/div><\/div><\/div><\/td>
18S V3V4<\/div><\/div><\/div><\/td><\/tr>
18S V9<\/div><\/div><\/div><\/td><\/tr>
Fungi\n<\/div><\/div><\/div><\/td>
ITS1\n<\/div><\/div><\/div><\/td><\/tr>
ITS2\n<\/div><\/div><\/div><\/td><\/tr><\/tbody>\n\t\t\t<\/table>\n\t\t<\/div>\n\n\t\t<\/div>\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t
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Standard Analysis Items\n<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t
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(\u203b For analysis on the ITS2 region, items marked with * are excluded from the results.)<\/p>

1. NGS QC Data<\/p>

2. Taxonomic Distribution
– Bar plots for relative ratio of microbes in phylum, class, order, family, genus, and species level<\/p>

3. Alpha Diversity
– Chao1, Observed Species, Shannon Index, Simpson Index, PD Whole Tree*<\/p>

4. Rarefaction Curves
– Chao1, Observed Species, Shannon Index, Simpson Index, PD Whole Tree*<\/p>

5. Beta Diversity
– Bray-Curtis*, Unweighted Unifrac*, Weighted Unifrac*<\/p>

6. UPGMA Trees
– Bray-Curtis*, Unweighted Unifrac*, Weighted Unifrac*<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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Additional Analysis Items<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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1. LEfSe 2. XOR 3. PICRUSt<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t

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Experimental Data<\/p><\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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<\/image><\/g><\/g><\/svg><\/div><\/div>\n<\/div>\n<\/div>\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t\t\t<\/div>\n\t\t\t<\/div>\n\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"

16S\/18S\/ITS Microbiome Analysis Microbiome Analysis 16S\/18S\/ITS Microbiome Service What is the 16S\/18S\/ITS Microbiome Analysis Service? The 16S\/18S\/ITS Microbiome Analysis identifies various microbiota\/eukaryote\/fungi (e.g. composition and distribution) in the collected samples to generate a customized microbiome profile. Areas of Analysis Microbiome Type Areas of Analysis Archaea, Bacteria 16S V1V2 16S V3V4 16S V4 Eukaryote 18S V3V4 […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":4266,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/accugenelab.com\/en\/wp-json\/wp\/v2\/pages\/4261"}],"collection":[{"href":"https:\/\/accugenelab.com\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/accugenelab.com\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/accugenelab.com\/en\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/accugenelab.com\/en\/wp-json\/wp\/v2\/comments?post=4261"}],"version-history":[{"count":5,"href":"https:\/\/accugenelab.com\/en\/wp-json\/wp\/v2\/pages\/4261\/revisions"}],"predecessor-version":[{"id":5772,"href":"https:\/\/accugenelab.com\/en\/wp-json\/wp\/v2\/pages\/4261\/revisions\/5772"}],"up":[{"embeddable":true,"href":"https:\/\/accugenelab.com\/en\/wp-json\/wp\/v2\/pages\/4266"}],"wp:attachment":[{"href":"https:\/\/accugenelab.com\/en\/wp-json\/wp\/v2\/media?parent=4261"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}